(Mainly just sort of a haphazard collection with a few gems, some online only)
The publishers of the Whole Earth Catalog started publishing a magazine called Coevolution Quarterly a couple of decades ago. The name was later changed to Whole Earth Review and then to just Whole Earth. This was easily my favorite magazine in the world. Anything could turn up in any issue. They stopped pubishling long ago. Some articles from past issues are online.
Yahoo - Magazines
Nama Rupa TOTALLY AWESOME yoga magazine. Now online only.
ZNet / Z Magazine
Arthur (archives only)
Gnosis (archive and back issues only)
Mother Earth News
Maybe Quarterly - www.maybelogic.org (online only)
Shaman's Drum - www.shamansdrum.org
Slade's Home Page